On partition, the Gilgit agency was handed over to the Maharaja of Jammu and Kashmir by the British government. Brigadier Ghansara Singh arrived at Gilgit to implement the charge, as Governor. Subsequently Major General H L Scott the chief of military staff of Kashmir joined him.
The troops of the Gilgit Scouts, being 100% Muslim, were in favour of accession to Pakistan. On 31 October 1947, in the afternoon, Honorary Captain Muhammad Baber Khan called a meeting of the Junior Commissioned Officers of the Gilgit Scouts in their mess,
where it was unanimously decided to over throw the Dogra rule.
The governor surrendered on 1 November 1947. The Muslim company of the 6 Jammu Kahmir Infantry battalion, coming to Gilgit from Bunji under the command of Captain Hassan Khan, also joined the Scouts. The Scouts attacked and destroyed a Dogra check post and burnt the Partab Bridge. The Sikh and Dogra elements of the Kashmiri forces deserted and were later captured.
27,000 square miles (70,000 km2) were thus liberated from the Dogra Raj. The force was then placed under the command of Major Muhammad Tufail Shaheed (Nishan-i-Haider), Honorary Captain Muhammad Baber Khan of 1st Northern Light Infantry Regiment, who played a vital role in the
war of liberation (from the Dogra Raj) in 1947.
Gilgit scouts were the first battalion in 1948 to capture Kargil and Batalik, where they were awarded the motto of Victors. Honorary Captain Muhammad Baber Khan took part in liberation war 1947/48