Islam, my friend had problems since its inception, even Prophet Mohammad PBUH had to fight for his survival because of Islam.
It is nothing new. If one thinks in a historical perspective, one can see that there were 12 crusades against Islam, The whole of Europe Christianity gathered to kill it in its infancy... with no avail. They gathered again against the ottoman Empire with the help of Russia, and couldn't succeed either but to stop the turks from taking Vienna on the demand of a Christian king.
What is going on today is the continuation of this onslaught on Islam, using the Media as another weapon for spreading defamation on the most peaceful religion ever, the religion of Abraham, since Islam relates directly to Abraham PBUH. Its anti-corruption ideology combined with no-nonsense rules of social conduct for individuals and societies makes it the bitterest medication to swallow for corrupt and twisted minded individuals, groups and societies... even within the Muslim world.
Not all Muslims are equal in thought, behavior or faith. So any criticism has to pinpoint the individuals and the groups that are guilty of something,- it is too bad that they happen to be "Muslims" in the middle east, but the whole middle east is majority Muslim and is the hottest point on earth today, by coincidence... - and leave Islam as a religion alone, it is heavenly and rightful. It suites only righteous people, thus the age old opposition to it. Most humans will rather prefer to have easy money, easy drugs, easy sex...etc, without thinking about the aftermath of their effects on the individual as well as on the societies. Islam brings with it a code of ethics to prevent these consequences, one can safely say that it is a proactive system to prevent social decadence and social disease.In brief, anyone who opposes such a system is rather an active decadent and a sick person or group.
Everyone can see how decadent and sick is America today... But that is another story altogether related to befriending a group of people known to spread social disease everywhere it went and throughout history for thousands of years.