The AIP propulsion requires the addition of a whole module section to the sub, so if you want to "upgrade" a diesel - electric sub to a AIP sub, you have to cut it half, add the new modul and weld everything together again.
So it is possible, but takes a lot of effort and costs, not to mention that there are risks if the joints are not correctly welded again.
Nuclear propulsions are costly and mainly are used for long range and endurance roles, but that is not important for most countries, which is why Diesel-Electric subs are still the best choice for the defence of certain coastlines.
For IN SSKs are important, because they are cheaper to procure and to operate, so can be ordered in higher numbers than SSNs for example. The addition of AIP makes Diesel-Electric subs even better, because they now have similar endurace as SSNs and sometimes are even quieter!
There main disadvantage is, that the AIP propulsion is limited to the fuel that is used and to very low speeds only, but for a sub that patrols in the Arabian Sea, low noise is the important factor not range or speed. That's why PNs Agostas now are a threat (although the only threat) now and that's why IN has to counter that as soon as possible with own AIP subs.
There are 2 crucial areas where our forces and MoD made major mistakes in the last few years and gave Pakistan an important advantage, the lack of AIP propulsion for subs and the late orders of more AWACS aircrafts!
That's not correct, the Germans had offered the fuel cell AIP from the U214 as a retrofit for the U209 and that is the only AIP that is on offer to be used on the U209. And there is no decision made about the modernisation of the U209, actually the Scorpenes were meant to replace them too, the new sub competition is meant as an replacement of the Kilo subs