If you are referring to the armed forces as per your usual tricks, i don't think they had an issue in how the funds are to be used or monitored, rather
the issue on which armed forces and majority of the political parties stood up was the conditions / strings attached which threatened the sovereignty left. Even now mechanism is in place to keep a check how the funds are utilized and USAID is trying its best that less goes to corruption and they are taking help of local agencies in that too. You can see a big bill board in Peshawar by USAID giving toll numbers to report misuse of any funds in projects of USAID and very recently NAB KPK helped USAID in recovering lot of their money which went into pockets of some people. anyway, that is something else, but blaming the military as usual is not gonna play here nor i would like to derail this thread, if you want, read the below article by Times which gives a clear picture, army has nothing to do with how funds are allocated & monitored, rather the issue was the conditons attached with it which US has nothing to do with. Its our internal matter, they are not satisfied, zero the aid, no one is forcing the US to give us money nor is Pakistan holding US the Super Power a hostage.
Pakistan: How the Kerry-Lugar Act Could Threaten Zardari - TIME
WikiLeaks: Pakistan military cast in favourable light – The Express Tribune
So,
plz stop bringing in Army where its not required.