Well, Europe has a long history of persecution of Jews, way before the holocaust. And historically you are wrong, Jews were persecuted all over the Muslim world. They just didn`t have a country to fight back with.
Since the 11th century, there have been instances of pogroms against Jews.[12] Examples include the 1066 Granada massacre, the razing of the entire Jewish quarter in the Andalucian city of Granada.[13] In North Africa, there were cases of violence against Jews in the Middle Ages,[14] and in other Arab lands including Egypt,[15] Syria.[16] and Yemen[17] Jewish population was confined to segregated quarters, or mellahs, in Morocco beginning from the 15th century. In cities, a mellah was surrounded by a wall with a fortified gateway. In contrast, rural mellahs were separate villages inhabited solely by the Jews.[18]
The Almohads, who had taken control of much of Islamic Iberia by 1172, were far more fundamentalist in outlook than the Almoravides, and they treated the dhimmis harshly. Jews and Christians were expelled from Morocco and Islamic Spain.[19] Faced with the choice of either death or conversion, some Jews, such as the family of Maimonides, fled south and east to the more tolerant Muslim lands, while others went northward to settle in the growing Christian kingdoms.[20][21]
In 1400, the Jews of Aleppo were herded into their synagogues and slaughtered to the last man by soldiers of Central Asian Islamic conqueror Tamerlane; the young women were raped.[22] In 1465, Arab mobs in Fez slaughtered thousands of Jews, leaving only 11 alive, after a Jewish deputy vizier treated a Muslim woman in an offensive manner. The killings touched off a wave of similar massacres throughout Morocco.[23][24]
In 1492, Askia Mohammad I came to power in the previously tolerant region of Timbuktu and decreed that Jews must convert to Islam or leave; Judaism became illegal in Mali, as it did in Catholic Spain that same year.[25]