Bollywood and Hollywood have a LONG history of painting the Muslim as the bad guy. You next to never see a Muslim in a positive role in these narratives.
That means you are selective in watching movies that suiting to your intrest....Rather bollywood crestes lot of movies stereotyping Hindu religious figures and treats them as villian...The difference lies in maturity of the people than cribbing foe every small thing..
It is also a fact that India is being challenged due to multiple reason by people who are mostly Muslims and Naxals...So our movies will reflect our situation on ground rather than sensitivity of Pakistan